Menna Arafat
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I develop computational frameworks to model disease trajectories and identify interventions to reverse disease states, with the goal of making disease predictable, controllable, and reprogrammable.

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Menna Arafat

Peer Reviewed Papers

Metabolomic analysis reveals key changes in amino acid metabolism in colorectal cancer patients.

Integrative Multi-Omics Profiling of Rhabdomyosarcoma Subtypes

Oncologic safety of sentinel lymph node biopsy using blue dye after neoadjuvant chemotherapy for breast cancer

Preprints & Softwares

Multi-modal single cell and genetic integration defines cytotoxic T cell regulatory states, HSPC suppression and inherited susceptibility in aplastic anaemia

CrosstalkX

Multi-Omics and Mutual Information Framework for TNBC

Selected Work

Integrated genetic and transcriptomic analyses reveal immune-regulatory pressure and constrained progenitor fitness in aplastic anaemia

Integrative single cell analysis of immune dysregulation and progenitor reprogramming in aplastic anaemia

Multi-dataset integration defines a robust extracellular vesicle miRNA signature and reveals distinct regulatory networks across breast cancer subtypes

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